如何在顶级科学杂志上发表论文.ppt

Click to edit Master title style,Click to edit Master text styles,Second level,Third level,Fourth level,Fifth level,*,What Is a First-Class Paper?,Major advance in a classic field,干细胞是如何分化成特定组织细胞的，胆固醇在人体的正常功用,New techniques and methods that can be widely used,人类基因组研究中的自动测序技术,PCR,Patch clamp,Discoveries with obvious practical implications,AIDS virus receptor,的发现,老年痴呆症基因的发现,Conceptual breakthrough,novel ideas,神经营养因子可以促进学习记忆,Challenge to traditional views,break dogma,脑内有可分裂的神经干细胞，打破了传统观念,Opening up new area,cross board,“,细胞凋亡”现象的发现,开辟了新的科研领域,What Is a Mediocre Paper?,Horizontal growth,I made the discovery in rats,you find the same,in cat.,Filling gaps,EGF activates JNK which is known to induce c-Jun expression.You show that EFG enhances c-Jun expression.,Working out details,I found NO induces the production of,cGMP,you work out dose response and time course.,Support existing idea,“me too”,EGF-R endocytosis requires dynamin,PDGF-R too.,Follow up,CREB binds to CRE.Working out CRE sequence.,Incomplete study,preliminary,How to Read Scientific Papers?,The Gilbert way,Keep these in mind when you read,What is the major question addressed in this paper?,Is this question important and why?,What are the approaches used in this paper,and whether they are adequate for the questions?,What are the novel idea or using innovative approaches?,What is the concept coming out of this paper?,Do the results presented support this new concept?,Weekly reading of CNS titles,Critical,appreciative,Editorial Policies of Different Journals,Cell/Neuron/Immunity,Editorial board does a lot of reviews.Editors discuss and decide,Nature sister journals,Editors discuss and decide,Science,Space meeting,editorial board,PNAS,Communicate,contribute,Track 3,Others,Procedures for High Profile Journals,Pre-submission,inquiry,Submit/,cover letter,Initial screen,Send out for reviews,Reject/soft reject/revise,Rebuttal,Revise again,Accept,significance/importance,general interests,unusual/surprising,news worthy,Initial screening,suggest reviewers,may take one,friends may not always support you,“not to review”always honored,“soft”and“harsh”reviewers,Selection of reviewers,You,Editors,Pope and Editor,Cover Letters,main findings,significance,suggested reviewers,“not to review”list,who have read,Dear Editor,We would like to submit the enclosed manuscript entitled GDNF Acutely Modulates Neuronal Excitability and A-type Potassium Channels in Midbrain Dopaminergic Neurons,which we wish to be considered for publication in,Nature Neuroscience,.,GDNF has long been thought to be a potent neurotrophic factor for the survival of midbrain dopaminergic neurons,which are degenerated in Parkinsons disease.In this paperwe report an unexpected,acute effect of GDNF on A-type potassium channels,leading to a potentiation of neuronal excitability,in the dopaminergic neurons in culture as well as in adult brain slices.Further,we show that GDNF regulates the,K,+,channels through a mechanism that involves activation of MAP kinase,.Thus,this study has revealed,for the first time,an acute modulation of ion channels by GDNF.,Our findings challenge the classic view of GDNF as a long-term survival factor for midbrain dopaminergic neurons,and suggest that the normal function of GDNF is to regulate neuronal excitability,and consequently dopamine release.These results may also have implications in the treatment of Parkinsons disease.,Due to a direct competition and conflict of interest,we request that Drs.XXX of Harvard Univ.,and YY of Yale Univ.not be considered as reviewers.With thanks for your consideration,I am,Sincerely yours,Dear Editor,We would like to submit the enclosed manuscript,entitled Ca,2+,-binding protein frequenin mediates GDNF-induced potentiation of Ca,2+,channels and transmitter release,which we wish to be considered for publication,in,Neuron,.,We believe that two aspects of this manuscript will make it interesting to general readers of,Neuron,.First,we,report that GDNF has a long-term regulatory effect on neurotransmitter release at the,neuromuscular synapses.,This provides the first physiological evidence for a,role of this new family of neurotrophic factors in functional synaptic transmission,.,Second,we show that the GDNF effect is mediated by enhancing the expression of,the,Ca,2+,-,binding protein frequenin.Further,GDNF and frequenin facilitate synaptic transmission by enhancing,Ca,2+,channel activity,leading to an enhancement of,Ca,2+,influx.,Thus,this study has identified,for the first time,a molecular target that mediates the long-term,synaptic action of a neurotrophic factor.Our findings may also have general implications in the cell biology of neurotransmitter release.,Dear Editor:,Enclosed are copies of a manuscript entitled BDNF and NT-4/5 Promote the Development of Long-Term Potentiation in the Hippocampus,which we wish to be considered for publication in,Nature.,As you know,there is a great deal of interest and excitement recently in understanding the role of neurotrophins in synapse development and plasticity,.,Our manuscript provides,for the first timethe physiological evidence that neurotrophins regulate long-term potentiation(LTP).,The main point of the paper is that the neurotrophins BDNF and NT-4 induce an earlier appearance of LTP in developing hippocampus.,In contrast to recent Science article by Erin Schumans group,we(and several other LTP groups)did not see that BDNF enhance basal synaptic transmission in adullt hippocampus.,However,we found that in adult hippocampus,inhibition of BDNF/TrkB activity attenuated LTP,and weak tetanus that normally cannot induce LTP produced enduring LTP.,These findings may have implications in the basic mechanism for regulation of synapse development and long-term modulation of synaptic efficacy.,Because of the rather competitive nature of the field and the important implication of our findings,we have not yet presented this work in any public forum.However,confidential discussion with several prominent neuroscientists such as 111 and 222 have generated tremendous excitement.Thus,we feel that this work is of general interest and is suitable for publication in,Nature.,We would like to suggest Drs.aaa of Yale Univ.,bbb of Harvard Medical School,and ccc of Univ.of California-Berkeley,as reviewers for this manuscript.Due to a direct competition and conflict of interest,we request that Dr.XX and YY.not be considered as reviewers.,Thank you very much for your consideration.,Titles,Important/significant,Unexpected/unusual,Function,Mechanisms,Simple,Straight forward,Specific,SynCAM,a synaptic adhesion molecule that drives synapse assembly,Inhibition of Retroviral RNA production by ZAP,a CCCH-type Zinc finger protein,Protein phosphatase 1 is a molecular constraint on learning and memory,E3 ubiquitin ligase that recognizes sugar chain,Molecular evolution of FOXP2,a gene involved in speech and language,Single cell gene profiling,Structure,mechanism,an regulation of the Neurospora plasma membrane H+,Modulation of postendocytic sorting of G-protein-coupled receptors,Distinct molecular mechanism for initiating TRAF6 signaling,Identification of;Role of;Involvement of,Abstract,Rationale,remain unknown”;“To determine”,Summary statement,“Here we show”,Body,Dont go into details;dont use many special terms,Significance,Must point out,but dont claim too much,Formation of the normal mammalian cerebral cortex requires the migration of GABAergic inhibitory interneurons from an extracortical origin,the lateral ganglionic eminence(LGE).Mechanisms guiding the migratory direction of these neurons,or other neurons in the neocortex,are not well understood.We have used an explant assay to study GABAergic neuronal migration and found that the ventricular zone(VZ)of the LGE is repulsive to GABAergic neurons.Furthermore,the secreted protein Slit is a chemorepellent guiding the migratory direction of GABAergic neurons,and blockade of endogenous Slit signaling inhibits the repulsive activity in the VZ.These results have,revealed,a cellular source of guidance for GABAergic neurons,demonstrated,a molecular cue important for cortical development,and,suggested,a guidance mechanism for the migration of extracortical neurons into the neocortex.,It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material.,J.D.Watson and F.H.C.Crick,MuSK plays an essential role in postsynaptic differentiation at the neuromuscular junction.However,the underlying mechanisms remained unclear.We demonstrate the interaction of MuSK with Dishevelled1(Dvl1)in muscle cells.The expression pattern of Dvl1 in developing and denervated muscle is similar to that of MuSK.Moreover,Dvl1 is enriched at the neuromuscular junction where MuSK is concentrated.Disruption of the interaction of MuSK with Dvl inhibits AChR clustering in muscle cells induced by agrin and motoneurons and attenuates the amplitude of spontaneous postsynaptic currents at the neuromuscular junction.In addition,Dvl1 interacts with PAK1 and mediates agrin-induced activation of PAK,which is required for AChR clustering.These results demonstrate essential roles of Dvl and PAK in agrin-induced AChR clustering,revealing a signaling pathway that required the MuSK-Dvl-PAK complex.,An important aspect of synapse development is the clustering of neurotransmitter receptors in the postsynaptic membrane.,Although MuSK is required for acetylcholine receptor(AChR)clustering at the neuromuscular junction (NMJ),the underlying molecular mechanisms remain unclear.We report here that in muscle cells,MuSK interacts with Dishevelled(Dvl),a,signaling molecule important for cell polarity,.,Dvl1 is localized at the neuromuscular synapses,.Disruption of the MuSK-Dvl interaction inhibits Agrin-induced and neuron-induced AChR clustering.Expression of dominant negative Dvl1 in the postsynaptic muscle cells reduces the amplitude of spontaneous synaptic currents at the NMJ.,Moreover,Dvl1 interacts with a,downstream kinase,PAK1.Agrin activates PAK,and this activation requires Dvl.,Inhibition of PAK1 activity attenuates AChR clustering,.These results demonstrate,important,roles of Dvl and PAK in Agrin/MuSK-induced AChR clustering,and reveal a,novel function of Dvl in synapse development,.,Sequence of writing,Abstract,Figure layout,Figure legend,Material and methods,Results,Introduction,Discussion,Introduction,What do we know about the subjects?,Only relevant information should be provided;dont write a review,What we dont know,Rationale,Why you want to do it?Dont repeat abstract,Approaches,How you are going to do it.,Significance,Make an appeal to general readers,In this study we have,examined,the role of chromogranins CGA and CGB,in dense-core secretory granule biogenesis.We,analyzed,the effect of specific depletion of either CGA or CGB,using an,antisense RNA strategy,on dense-core secretory granule formation in rat pheochromocytoma(PC12)cells,a model neuroendocrine cell line.We,also expressed,CGA in a pituitary cell line(6T3)lacking the regulated secretory pathway and nonendocrine fibroblast cells to determine its effect on induction of dense-core secretory granule biogenesis and regulated secretion.,Finally,we determined whether CGA could regulate the level of other secretory granule proteins in neuroendocrine and endocrine cells,PC12 and 6T3.,These studies identified,CGA as a key regulator of dense-core secretory granule biogenesis and storage of other granule proteins in endocrine cells.,Results,Logic,Need to explain the rationales in the beginning,Connections between paragraphs,Dont jump,Previous studies,have shown that membrane depolarization-triggered Ca,2+,influx through L-type VSCCs induces an increase in,BDNF,mRNA expression in cultured neurons(Zafra et al.,1990,;Ghosh et al.,1994,).This increase in,BDNF,mRNA,could be the,result of,increased transcription initiation,or,increased,BDNF,mRNA stability,or both,.,To determine,if membrane depolarization stimulates,BDNF,transcription,we.,Given the finding,that Ca,2+,influx through L-type VSCCs induces,BDNF,transcription,experiments were carried out to determine,which of the four,BDNF,promoters is capable of mediating a Ca,2+,response.,As described above,the rat,BDNF,gene consists of four distinct 5 exons each driven by a specific promoter and each spliced to a common 3 exon that encodes the BDNF protein.Since each of the four primary,BDNF,transcripts can be polyadenylated at one of two sites,a total of eight,BDNF,transcripts are generated.,In principle,the,eight transcripts can be distinguished by Northern blotting using 5exonspecific probes,since each of the four 5 exon probes should detect a short and a long,BDNF,transcript.,By identifying,the specific,BDNF,mRNAs induced upon Ca,2+,influx through L-type VSCCs,it should be possible,to identify which of the four,BDNF,promoters is Ca,2+,responsive,since the Ca,2+,-responsive promoter(s)would be expected to be located just 5 of the initiation site of,BDNF,mRNA synthesis.,Discussion,Summary of main findings,Papers that support you,but dont downgrade your novelty,Pitfalls and why,Significance.Dont speculate too much,The results in the present study may have,a number of implications,in the cell biology of tyrosine kinase receptors.,First,we report the.To our knowledge,this is the first demonstration for.Thus,our results suggest a cross-talk between Ca,2+,and tyrosine kinase signaling pathways.,Secondthe present study reveals an important regulatory effect of.It will be interesting to determine whether.,Finally,we show that.Xxx.,Taken together,these results suggest a general role of tyrosine kinase in the endocytosis of growth factor receptors.,There are,three main findings,in the present studyFirst,we report a GDNF-induced long-term facilitation of neurotransmitter release at the neuromuscular synapses.,Second,we show that the effect of GDNF on synaptic transmission is mediated by an increase in the expression of the,Ca,2+,-,binding protein frequenin.,Finally,we demonstrate that GDNF and frequenin facilitate synaptic transmission by enhancing N-type,Ca,2+,channel activation,leading to an enhancement of,Ca,2+,influx.Thus,this study has identified,for the first time,a molecular target that mediates the long-term,synaptic action of a neurotrophic factor.Our findings may,also provide new insights,into the regulatory mechanisms of neurotransmitter release.,Revise your paper,Be calm about reviewers criticisms.,Always make editor your friend,Never argue with reviewers,Try to do everything that reviewers ask,Seize the opportunity when reviewers make mistakes,When your paper gets rejected without review,Dear Editor,I would appreciate if you could reconsider to review our manuscript,“111.We feel strongly that this is an important subject that touches one of the central dogmas in neuroscience:xxx.It is also very timely,given the publication of the paper by X and Y entitled“222”i